Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LIHC | rs1113098 | chr4:44652187 | C/G | 0.000157 | 192 | 14.03 | 13.23 | 7.43 | KM Plot |
| LIHC | rs111315781 | chr2:201738724 | T/A | 2.86E-7 | 190 | 13.83 | 12.28 | 2.23 | KM Plot |
| LIHC | rs111374400 | chr12:112293910 | T/C | 7.96E-6 | 192 | 12.57 | 14.85 | 4.03 | KM Plot |
| LIHC | rs111444486 | chr11:73501240 | G/A | 1.06E-5 | 189 | 13.53 | 12.43 | 1.87 | KM Plot |
| LIHC | rs111510050 | chr12:112407588 | TG/T | 6.38E-6 | 191 | 12.57 | 14.98 | 5.17 | KM Plot |
| LIHC | rs111537617 | chr7:154855584 | A/ACTTG | 6.05E-5 | 192 | 14.07 | 4.3 | 16.07 | KM Plot |
| LIHC | rs111553349 | chr11:73556945 | T/G | 1.2E-5 | 192 | 13.57 | 12.8 | 1.87 | KM Plot |
| LIHC | rs111577221 | chr11:73525535 | T/G | 1.2E-5 | 192 | 13.57 | 12.8 | 1.87 | KM Plot |
| LIHC | rs11168866 | chr12:39022036 | A/T | 8.76E-8 | 192 | 14.27 | 8.27 | 0.23 | KM Plot |
| LIHC | rs11168979 | chr12:39044427 | T/C | 9.44E-8 | 191 | 14.35 | 8.67 | 0.22 | KM Plot |
| LIHC | rs111711488 | chr12:112402668 | A/AT | 6.38E-6 | 191 | 12.57 | 14.98 | 5.17 | KM Plot |
| LIHC | rs111752063 | chr12:112297450 | G/T | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs111794065 | chr20:61809230 | G/A | 6.81E-12 | 184 | 12.9 | 13.9 | 0.47 | KM Plot |
| LIHC | rs112016647 | chr11:73444064 | G/A | 1.52E-5 | 189 | 13.53 | 13.17 | 1.87 | KM Plot |
| LIHC | rs112045156 | chr3:10313071 | C/T | 1.84E-5 | 191 | 13.9 | 13.35 | 0.2 | KM Plot |